Step 1 — Welcome
After installing Xero Integration by Cloudify from the Shopify App Store, you’ll see the welcome screen:- Instant invoices — Automatic Xero invoice creation for every Shopify order.
- Accurate sync — Customer and tax data stays consistent across platforms.
- Save time — Save up to 5 minutes of manual entry per order.

Step 2 — Connect to Xero
Connect your Xero account to authorize the integration with Shopify. Click “Connect to Xero” and sign in with your Xero credentials. Once authorized, the integration will have access to create invoices, contacts, and items in your Xero org.
Step 3 — Select Synchronization Mode
Choose how your Shopify sales and orders should sync to Xero. This is the most important decision in the setup.
Convert Orders to Invoices
Sync each Shopify order as its own individual invoice in Xero.Full transactional traceability. Best if you need to match customers, products, shipping, and generate invoices for every single Shopify order.
Generate a Daily Sales Summary
Combine all transactions into a single consolidated invoice and credit note each day.Keep your bank ledger tidy. Recommended for high-volume stores.
- Convert Orders to Invoices → Click “Continue with Invoices”. Cloudify auto-configures your settings and takes you to the “You’re All Set!” screen (see Step 4 below).
- Generate a Daily Sales Summary → Click “Continue to Settings”. You’ll be taken directly to the Sales Summary configuration page to set up transfer frequency, tax mapping, accounts, and payment methods. See the Sales Summary Mode guide for full details.
Step 4 — You’re All Set!
This screen appears when you choose Convert Orders to Invoices. If you chose Daily Sales Summary, you’ll configure settings on a separate page instead.

Smart Settings (Auto Configured)
These settings are applied automatically and can be changed anytime from the app settings:These are your default settings. You can change them anytime from Customize or the App Settings section.
Quick Actions
Use these to verify your setup before going live:Automate Payouts and Bookkeeping
Toggle this on to let the integration manage payout data in Xero automatically.
You can also click “Send to accountant” to share these settings with your accountant for review.
These account mappings are managed by Cloudify to prevent matching discrepancies. Click Save when you’re done.